Index

A

assign_fate() (in module celltag_tools.tools), [1]

C

call_clones() (in module celltag_tools.tools), [1] celltag_mtx_dict (class in celltag_tools.celltag_data), [1] celltag_tools module celltag_tools.celltag_data module, [1] celltag_tools.plotting module, [1] celltag_tools.tools module, [1]

celltag_tools.utils module, [1] CellTagData (class in celltag_tools) (class in celltag_tools.celltag_data), [1] check_mtx_dict() (in module celltag_tools.utils), [1] create_allow_mtx() (in module celltag_tools.tools), [1] create_bin_mtx() (in module celltag_tools.tools), [1] create_metric_mtx() (in module celltag_tools.tools), [1]

D

diagnostic_plots() (in module celltag_tools.plotting), [1]

F

find_homoplasy() (in module celltag_tools.utils), [1]

fix_sparse_clones() (in module celltag_tools.tools), [1]

G

get_clone_cell_embed() (in module celltag_tools.utils), [1]

get_clone_celltag_mtx() (in module celltag_tools.tools), [1]

I

ident_sparse_clones() (in module celltag_tools.tools), [1]

is_empty() (celltag_tools.celltag_data.celltag_mtx_dict method), [1] items() (celltag_tools.celltag_data.celltag_mtx_dict method), [1]

J

jaccard_similarities() (in module celltag_tools.utils), [1]

K

keys() (celltag_tools.celltag_data.celltag_mtx_dict method), [1]

M

merge_nn() (in module celltag_tools.utils), [1] module celltag_tools celltag_tools.celltag_data, [1] celltag_tools.plotting, [1] celltag_tools.tools, [1] celltag_tools.utils, [1]

N

naive_atac_rna_pairing() (in module celltag_tools.tools), [1]

P

plot_size_by_den() (in module celltag_tools.plotting), [1]

R

read_celltag() (in module celltag_tools.tools), [1]

S

save() (celltag_tools.celltag_data.CellTagData method), [1] (celltag_tools.CellTagData method)

T

table_to_spmtx() (in module celltag_tools.utils), [1]

V

values() (celltag_tools.celltag_data.celltag_mtx_dict method), [1]